A B C D E F G I L M N P R S T

A

AdaptiveModel - Class in pacemaker

Useful static code related to Phase Response Curve (PRC) related to "ADAPTIVE" model (Ermentrout, 1991) .

AdaptiveModel() - Constructor for class pacemaker.AdaptiveModel

addFlash(long, long) - Static method in class pacemaker.EmissionObserver

adjustable_period - Variable in class pacemaker.FireflyProtocol

the period we choiced to use, for models that adjust the frequency of flashing, eg ADAPTIVE model NOW it's a double: store also micro-adjustment.

B

b - Static variable in class pacemaker.Firefly

B - Static variable in class pacemaker.millisec_Species

B - Static variable in class pacemaker.Species

birth - Variable in class pacemaker.FireflyProtocol

the time when I first come to life, in Simulator time.

C

clone() - Method in class pacemaker.EventAggregation

clone() - Method in class pacemaker.Firefly

cycle - Variable in class pacemaker.FireflyProtocol

Count the number of cycles done.

D

data - Static variable in class pacemaker.millisec_Species

Real Data from firefly species.

data - Static variable in class pacemaker.Species

Real Data from firefly species.

doFlash() - Method in class pacemaker.Firefly

Do Emission of a Firefly Flash.

doFlash() - Method in class pacemaker.FireflyProtocol

E

EmissionObserver - Class in pacemaker

EmissionObserver(String) - Constructor for class pacemaker.EmissionObserver

epsilon - Static variable in class pacemaker.Firefly

EPSILON - Static variable in class pacemaker.millisec_Species

EPSILON - Static variable in class pacemaker.Species

eval_inverse_PRC(double, int) - Static method in class pacemaker.MaSModel

Evaluate the inverse function f-1 of the PRC: given the y value, you get the x value (the phase).

eval_PRC(double, int, int, int) - Static method in class pacemaker.AdaptiveModel

Evaluates the PRC for the given phase.

eval_PRC(double, int) - Static method in class pacemaker.MaSModel

Evaluates the PRC for the given phase (x).

EventAggregation - Class in pacemaker

EventAggregation(String) - Constructor for class pacemaker.EventAggregation

execute() - Method in class pacemaker.EmissionObserver

F

fcore(double) - Static method in class pacemaker.AdaptiveModel

Evaluate the common core of g⁺ and g^- functions:

Firefly - Class in pacemaker

Firefly(String) - Constructor for class pacemaker.Firefly

FireflyProtocol - Class in pacemaker

The implementation of a protocol inspired by Fireflies.

FireflyProtocol(String) - Constructor for class pacemaker.FireflyProtocol

G

getAdjustable_period() - Method in class pacemaker.FireflyProtocol

getValue() - Method in class pacemaker.EventAggregation

gminus(double) - Static method in class pacemaker.AdaptiveModel

Evaluates the g^- function.

gplus(double) - Static method in class pacemaker.AdaptiveModel

Evaluates the g⁺ function.

I

inert - Static variable in class pacemaker.Firefly

INERT - Static variable in class pacemaker.millisec_Species

INERT - Static variable in class pacemaker.Species

initSchedule() - Method in class pacemaker.Firefly

Run just after contructor or Firefly.clone(), here we must set up a first event delivered to self: because execution took place in a node when an event is delivered, without this such first event, this node won't start.

initSchedule() - Method in class pacemaker.FireflyProtocol

L

last_cycle_time - Variable in class pacemaker.FireflyProtocol

the time (simulator's timestamp) we start the last cycle.

last_flash_time - Variable in class pacemaker.FireflyProtocol

The LAST TIME (simulator's timestamp) we DO FLASH.

last_stimulus_time - Variable in class pacemaker.FireflyProtocol

the time (simulator's timestamp) we received the last stimulus (other's pulse) from the environment.

lid - Static variable in class pacemaker.FireflyProtocol

Identifier of the linkable ID

M

main(String[]) - Static method in class pacemaker.AdaptiveModel

For testing purposes

main(String[]) - Static method in class pacemaker.MaSModel

For testing purposes

main(String[]) - Static method in class pacemaker.Species

MaSModel - Class in pacemaker

Useful static code related to Phase Response Curve (PRC) related to "MAS" model (Mirollo and Strogatz 1990).

MaSModel() - Constructor for class pacemaker.MaSModel

max - Static variable in class pacemaker.Firefly

MAX - Static variable in class pacemaker.millisec_Species

MAX - Static variable in class pacemaker.Species

millisec_Species - Class in pacemaker

OLD DATA in millisec values, now using usec preferably Holds data from real species of fireflies, as found in literature.

millisec_Species() - Constructor for class pacemaker.millisec_Species

min - Static variable in class pacemaker.Firefly

MIN - Static variable in class pacemaker.millisec_Species

MIN - Static variable in class pacemaker.Species

model - Static variable in class pacemaker.Firefly

MODEL - Static variable in class pacemaker.millisec_Species

MODEL - Static variable in class pacemaker.Species

N

n_received - Variable in class pacemaker.FireflyProtocol

How many msg I received since birth

NAME - Static variable in class pacemaker.millisec_Species

Next static Strings explicits the corripondence between

NAME - Static variable in class pacemaker.Species

Next static Strings explicits the corripondence between

next_cycle_time - Variable in class pacemaker.FireflyProtocol

the time (simulator's timestamp) we scheduled our next cycle.

P

pacemaker - package pacemaker

PAR_B - Static variable in class pacemaker.Firefly

String name of the paramater used to determine the form of the Phase Response Curve (PRC) for the "MAS" model.

PAR_EPSILON - Static variable in class pacemaker.Firefly

String name of the paramater used to determine the pulse strength parameter named epsilon for the "MAS" model.

PAR_FANOUT - Static variable in class pacemaker.FireflyProtocol

PAR_HEAR - Static variable in class pacemaker.FireflyProtocol

PAR_INERT - Static variable in class pacemaker.Firefly

String name of the paramater used to specify the inert (or refractory) post-flash period of a firefly.

PAR_MAX - Static variable in class pacemaker.Firefly

String name of the paramater used to determine maximal period to which the Fyrefly can adapt, for the "ADAPTIVE" model.

PAR_MIN - Static variable in class pacemaker.Firefly

String name of the paramater used to determine minimal period to which the Fyrefly can adapt, for the "ADAPTIVE" model.

PAR_MODEL - Static variable in class pacemaker.Firefly

String name of the paramater used to specify the "reaction" model.

PAR_PERIOD - Static variable in class pacemaker.Firefly

String name of the parameter used to determine the period of a firefly.

PAR_PREP - Static variable in class pacemaker.Firefly

String name of the paramater used to specify the preparatory pre-flash period of a firefly.

PAR_PULSE_DURATION - Static variable in class pacemaker.Firefly

String name of the paramater used to specify the duration of the light impulse.

PAR_RELAXATION - Static variable in class pacemaker.Firefly

String name of the paramater used to determine the relaxation parameter that measures the rate at which the Firefly will return to its natural frequency (natural_frequency is 1/period parameter).

PAR_SPECIES - Static variable in class pacemaker.Firefly

String name of the parameter used to suggest the simulator you want to simulate a particular species of firefly.

PAR_START - Static variable in class pacemaker.FireflyProtocol

String name of the parameter used to configure the starting time of the firefly protocol, e.g.

period - Static variable in class pacemaker.Firefly

PERIOD - Static variable in class pacemaker.millisec_Species

PERIOD - Static variable in class pacemaker.Species

pid - Static variable in class pacemaker.FireflyProtocol

Identifier of the protocol ID

prep - Static variable in class pacemaker.Firefly

PREP - Static variable in class pacemaker.millisec_Species

PREP - Static variable in class pacemaker.Species

processEvent(Node, int, Object) - Method in class pacemaker.EventAggregation

processEvent(Node, int, Object) - Method in class pacemaker.FireflyProtocol

Process 2 types of events: Timer (when clock ticks) and Pulse (from other fireflies).

pulse_duration - Static variable in class pacemaker.Firefly

PULSE_DURATION - Static variable in class pacemaker.millisec_Species

PULSE_DURATION - Static variable in class pacemaker.Species

R

receive(Node, int, Object) - Method in class pacemaker.Firefly

Performed by Firefly when she senses a light impulse.

receive(Node, int, Object) - Method in class pacemaker.FireflyProtocol

Called by FireflyProtocol.processEvent(Node, int, Object) when the event is a light pulse from a neighbor firefly.

relaxation - Static variable in class pacemaker.Firefly

RELAXATION - Static variable in class pacemaker.millisec_Species

RELAXATION - Static variable in class pacemaker.Species

S

setPeriod(int) - Method in class pacemaker.FireflyProtocol

Setter for use with initializers.

setStart(int) - Method in class pacemaker.FireflyProtocol

Setter for use with initializers.

setValue(double) - Method in class pacemaker.EventAggregation

species - Static variable in class pacemaker.Firefly

Species - Class in pacemaker

Holds data from real species of fireflies, as found in literature.

Species() - Constructor for class pacemaker.Species

start - Variable in class pacemaker.FireflyProtocol

T

tid - Static variable in class pacemaker.FireflyProtocol

Identifier of the transport ID

timestamp - Variable in class pacemaker.FireflyProtocol

Useful for implementing a technique of modifiable timer for peersim EDSimulator.

A B C D E F G I L M N P R S T